Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------MFLNTIESQFDKVAEDYDFVNELLNDYSFFVSNMSPKKGRALDIGCGSGLLVEKLASYYDEVVGIDISNQMLDLAKSKRQLTNTVYLNMNAEQLN-----FNEKFDFIVS-RTTFHH--LDDIASVIQQMKELLNEEGR-IVILDNVSEVETPPTYVYKLGAIQEFLPHCFKFGI-KNAIRIYNHNTSKSWLEHLASDKYLSEQNYYDLYEKLLPGCQFHKMGWAMGVVWTK |
| 3GGD Chain:A ((3-245)) | EKLSAIKKPDINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPEL-PLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG----CIDFFNSLLEKYGQLPYELL-LVMEHGIRPGIFTAEDIELYFPDFEILSQGEGLFQSIHKLPDGNYATPPAFWAVIKHR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GGD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70059 for 1693 contacts (-41.4/contact) +
2D Compatibility (PS) -22546 + (NN) -4700 + (LL) 476
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -102029.0 ( -60.27 by residue)
QMean score : 0.332
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