Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKHYQIVIIGGGTAGVTVASRLLRKNQNLKEKIAIIDPADHHYY-QPLWTLVGA-GVSSLKSSRKDMESVIPEGANWIK-QAVSSFQPENNSVILGDNTVVYYDFLVVAPGLQINWSSIKGLKENIGKNGVCSNYSPDYVNETWNQISNFKQGNAIFTHPNTPIKCGGAPMKIMYLAEDYFRKHKIRSNANVIYATPKDALFDV---GKYNKELERIVEERNITVNYNYNLVEIDGDKK--VATFEHIKAYDRKTISYDMLHVTPPMGPL-DVVKESTLSDSEGWVDVNPTTLQHKSYSNVFALGDASNVPT-------SKTGAAIRKQAPIVANNLLQVMNNQMLTHHYDGYTSCPIVTGYNRLILAEFDYNKNTKETMPFNQAKERRSMYIFKKDLLPKMYWYGMLKGLI |
| 3EF6 Chain:A ((3-311)) | ----THVAIIGNGVGGFTTAQALR--AEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQL----PGVVTLRTYGDVQVLRDSW----------TSATRLLIVGGGLIGCEV--ATTARKLG----LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASD-----GRSFVADSALICVGAEPADQLARQAGLAC-DRGVIVDH-CGA-TLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNV---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EF6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157968 for 2476 contacts (-63.8/contact) +
2D Compatibility (PS) -32253 + (NN) -16370 + (LL) 6540
1D Compatibility (HY) -5600 + (ID) 2800
Total energy: -208451.0 ( -84.19 by residue)
QMean score : 0.403
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