Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERTILDTISQYVEGFEVASQGEIAKGL-AFKP----ANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLA-GPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQFE---WDNFVENFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFARE-------VQIDAISTGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE |
| 1KNW Chain:A ((18-400)) | ---------LRLPAEFGCPVWVYDAQIIRRQIAALKQ-FD---VVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQI-PVNAGSVDMLDQLGQVS----PGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQ-RHHLQLVGIHMHIGSGVD-YAHLEQVCGAMVRQ---V-IEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGR--S--LEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSN-YNSRPLLPEVLFDNG---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KNW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201036 for 3147 contacts (-63.9/contact) +
2D Compatibility (PS) -38822 + (NN) -13191 + (LL) 1856
1D Compatibility (HY) -15200 + (ID) 3800
Total energy: -270193.0 ( -85.86 by residue)
QMean score : 0.480
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