Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPGGVPTGEEIRKIVLEGND--MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
4GMD Chain:D ((8-211))
---FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPV-------------LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERL
General information:
TITO was launched using:
RESULT:
Template:
4GMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69371 for 1435 contacts (-48.3/contact) +
2D Compatibility (PS) -20552 + (NN) -8699 + (LL) 1140
1D Compatibility (HY) -10400 + (ID) 3650
Total energy: -111532.0 ( -77.72 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4GMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMD-query.scw
PDB file :
Tito_Scwrl_4GMD.pdb
: