Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTE-ECLHRIRKERWGPRTLDVDILLY----GEEMI-DLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
2BMB Chain:A ((20-165))
--RAFLAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFMNGCVEVETLLTPSELLKLCKKIEYEELQ---------RTIDLDIVMFLNSAGEDIIVNEPDLNIPHPRMLERTFVLEPLCELISPV-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2BMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102371 for 899 contacts (-113.9/contact) +
2D Compatibility (PS) -13121 + (NN) -5124 + (LL) 2664
1D Compatibility (HY) -14000 + (ID) 2800
Total energy: -134752.0 ( -149.89 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_2BMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMB-query.scw
PDB file :
Tito_Scwrl_2BMB.pdb
: