Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
3GKX Chain:A ((3-117))
-TLFLQYPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKFFNTSGVVYKELKLSSKLPTMTEEEQIALLATNGKLVKRPLVVTERFVLVGFKPEEWEKLK--
General information:
TITO was launched using:
RESULT:
Template:
3GKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18853 for 805 contacts (-23.4/contact) +
2D Compatibility (PS) -12004 + (NN) 390 + (LL) 540
1D Compatibility (HY) -6400 + (ID) 1750
Total energy: -38077.0 ( -47.30 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3GKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKX-query.scw
PDB file :
Tito_Scwrl_3GKX.pdb
: