Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MITVDITVNDEGKVTDVIMD--------GHADHGEY--GHDIVCAGA-SAVLFGSVNAIIGLTSERPD-----INYDDNGGHFHIRSVDTNNDEAQLILQTM------LVSLQTIEEEYNENIRLNYK-
2Y9W Chain:C ((9-150))
LDLPGTRILNGANWANNSATSGTLIIFDQSTPGQDADRWLIHNYLDGYKIFNMGSNNWASVSRGNTVLGVSEFDGQTCKWSIEYSGNGEEFWIRVPREGGGGAVWTIKPASSQGPTTVFLDLLKET-DPNQRIKFAV
General information:
TITO was launched using:
RESULT:
Template:
2Y9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48872 for 682 contacts (-71.7/contact) +
2D Compatibility (PS) -11016 + (NN) -1506 + (LL) 92
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -66452.0 ( -97.44 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_2Y9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y9W-query.scw
PDB file :
Tito_Scwrl_2Y9W.pdb
: