Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKHKKGSIFGIIGLVVIFAVVSFLFFSMISDQIFF---KHVKSDIKIEKLN------VTLNDAAKKQINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQFLDLSKYQGIDKNRIKRMLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALLETGAVKSELANGVEIDGKKYYNFYGVGALDKDPIKTG--------AEYAKKHGWDTPEKAISGGADFIHKHF-LSSTDQNTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYKNMKTEGKY----FKYFVYKDDSKHLNK------------- |
| 3TM8 Chain:A ((20-328)) | ---HMDYVSIRVSTLRGDQKIDFNAYVKINDKMILYLRRGDSFEGERLKRLKDKKLRKMYILTDEENSYRTYLQKNIETAYDDTTGKDIQTRADIIQGSQQNNAEEVFE------NPENVESYNYCKDAAGKYVNFIMSNAQALSAVMNIENTDKTISHHGV-TVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQDKKHFDQTVINIIGQHEETINGTGPKGLREKDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMIDHVGKHPLQHIQHLNDILKGL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TM8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 33268 for 2217 contacts (15.0/contact) +
2D Compatibility (PS) -28075 + (NN) -831 + (LL) 988
1D Compatibility (HY) 2000 + (ID) 1550
Total energy: 5800.0 ( 2.62 by residue)
QMean score : 0.137
|
|
|