Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPA-ETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
3GP5 Chain:B ((9-236))
MYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPY-ADPRYAKVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPIRHYYL
General information:
TITO was launched using:
RESULT:
Template:
3GP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87731 for 1865 contacts (-47.0/contact) +
2D Compatibility (PS) -24080 + (NN) -5870 + (LL) 176
1D Compatibility (HY) -23200 + (ID) 5700
Total energy: -146405.0 ( -78.50 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_3GP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP5-query.scw
PDB file :
Tito_Scwrl_3GP5.pdb
: