Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEKFDLVKLLNILKKNIKLLLILPAICLVVSTALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYST---AELNSFLKVT-NQTNSQ---IITVSVTTGNKSESDKIVNRISKVFA----HDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF |
1QYS Chain:A ((3-94)) | ------------------------------------------------------------------------------DIQVQVNIDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDINVTFDGDTVTVEGQL------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QYS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16731 for 517 contacts (32.4/contact) +
2D Compatibility (PS) -8493 + (NN) -990 + (LL) 12840
1D Compatibility (HY) 2000 + (ID) 500
Total energy: 21588.0 ( 41.76 by residue)
QMean score : 0.160
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