Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MQNQYFTVQENYKERFYQIPKV--FFTSENYKNLTNDMKIAYAILRDRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVEPYGEK----DVRFSNVQKFENRTSRSSK----IERPEVRKSNTNDTDFNDIDFNDTENNDMNDLNDIKYKNEISNHSNHSNQFTHNFDDKEMLLQ------EFPEQLTNYLLKYDYRDLEIIKAVILKAKKSFNSRHEDMHYMLEDIEDEILTSLKRLKKAIHDRGVKGQKETIKSMQAYLMQTILTELEETHALYMRRKNMKQYNIFNQ--------- |
| 4WID Chain:A ((10-362)) | KDMALQHAVDLLEKMLADEEKLTEFNLGDPLFESANDDPIKTLEEIIQEGDDVVGAHQLVVTQIKLRVQRNRRLADEII-----REQLTDIRKVFSDKFEKLEQGIQNSYLLLDK-----------LKTPFQDMRCLFEVANEQFNDTPVPPQYKEFMVCLKQIVQYAVNSSSLEKFVMLITKKDDIKDRVTYTCMKYLLMAMQGTGGPKAINNEEHAKLFFQLSNYDDLTDANHDGLELIKKLDKEQKEVAFHVNNFTHLVTTLGMALYKEGHQKNDEAMLGMHTPITMLSDQVRVLILYLIDEIVHAIHTNSNQSNDELIDGLKP-KVRIVINEFHAT--LMMGIDKMKFYS-LNELREIVNDKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WID.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 84961 for 2010 contacts (42.3/contact) +
2D Compatibility (PS) -32641 + (NN) -12559 + (LL) 1404
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: 23615.0 ( 11.75 by residue)
QMean score : 0.254
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