Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLK-----SPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGVF
1BML Chain:C ((285-372))
DPFDRSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPRDKAKLL----------YNNLDAFGIMDYTLTGKVEDNHD--DTNRIITVYMGKR
General information:
TITO was launched using:
RESULT:
Template:
1BML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48117 for 472 contacts (-101.9/contact) +
2D Compatibility (PS) -7824 + (NN) 6533 + (LL) 1660
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -50248.0 ( -106.46 by residue)
QMean score : 0.098
(partial model without unconserved sides chains):
PDB file :
Tito_1BML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BML-query.scw
PDB file :
Tito_Scwrl_1BML.pdb
: