Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYSAIPTPCYALESERLEKNAKILEIVRQQSGAKVLLALKGYAFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLATS-IIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKE--HGLEGVSGLHFHTHCEQN-ADALCRTLEHVERHFKPY----LENMAWVNFGGGHHITRS--DYDVNLLIQTIKDFKERYH-NTEVILEPGEAIGWQCGFLIASVIDIVQ-NDQEIAILDASFSAHMPDCLEM-PYRPSILKVSVENDEEIIEVEKGENQGAFSYFLGGPTCLAGDFMGS-FSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKIDSQGFKILKSFSYEDYKNRN |
| 2PLJ Chain:A ((50-410)) | ---VEQFGAPLLLLDCDVIRQQYRALKNALP--NVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASE--GV-PADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYR------------DDVELLVRLSF---------------SKKFGCSPEQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIK--------------QGGELIPSVLSGPTCDSVDVIAENILLP-KLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEFV---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PLJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189240 for 2875 contacts (-65.8/contact) +
2D Compatibility (PS) -36297 + (NN) -10584 + (LL) 3812
1D Compatibility (HY) -14400 + (ID) 2650
Total energy: -249359.0 ( -86.73 by residue)
QMean score : 0.436
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