Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MKRM-LAEFEKIQAILMAFPHEFGDWAYCIEEARESFLHIIQTIAKHAKVLVCVHTNDTIGYETLKNLPGVEIARID-T-NDTWARDFGAISV--ENHGVLECLDFGFNGWGLKYPSNLDNQVNFKLKHLGFLKH--PLKTMPY-ILEGGSIESDGAGSILTNTQCLLEKNRNPHL-NQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDT-LARFLNKDTIVYSACEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAVY-NENQQ----------------RLPATYVNFLLCNNALIVPTYNDP-NDTLILETLRQHTP-LEVIGVD-CNTLIKQHGSLHCVTMQLY---- |
| 1VKP Chain:A ((5-376)) | RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQ---WENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPH-MSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCC-FARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173880 for 2828 contacts (-61.5/contact) +
2D Compatibility (PS) -35559 + (NN) -14276 + (LL) 360
1D Compatibility (HY) -12800 + (ID) 4750
Total energy: -240905.0 ( -85.19 by residue)
QMean score : 0.442
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