Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVH-----SKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
4G89 Chain:A ((7-234))
--KIGIIGAMEEEVTLLRDKIE-NRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAAMGATLLLERCQPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADEKLVAAAESCIKALDLNAVRGLIVSGDAFINGSVGLAKIRHNFP----QAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNL
General information:
TITO was launched using:
RESULT:
Template:
4G89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143319 for 1991 contacts (-72.0/contact) +
2D Compatibility (PS) -23334 + (NN) -2639 + (LL) 920
1D Compatibility (HY) -15600 + (ID) 3800
Total energy: -187772.0 ( -94.31 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_4G89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G89-query.scw
PDB file :
Tito_Scwrl_4G89.pdb
: