Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------MSRNEVLLNGDINFKEVRCVGDNGEVYGIISSKEALKIAQNLGLDLVLISASAK--PPVCKVM------DYNKFRYQNEKKIKEAKKKQKQIEIKEIK-LSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPKNEKKTKENNPPFNRINLMKGENHAKNED |
| 3SKQ Chain:A ((23-249)) | KLIEIRKKTSEFLHETLEESNLITYNTIENAEKKQKFLNFFRKLYSAKEGKI--MTFQHDEISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLELRLRQKIPSVLMVLSSTFTF------GGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQVLSSIPDPVYN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 46794 for 1347 contacts (34.7/contact) +
2D Compatibility (PS) -19515 + (NN) -5929 + (LL) 788
1D Compatibility (HY) -3200 + (ID) 1700
Total energy: 17238.0 ( 12.80 by residue)
QMean score : 0.172
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