Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKSVIVGAISLAMTSLLSAETPKQE----KAIKTSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYG--SNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLHFGFFLGVAIGGTSWGPTNYYFKDLAEEYRGSFHPSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRNNYYTASADNVPEGTTYRFTFHRPYAFYWRYIVSF |
| 3QVL Chain:A ((1-245)) | SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGDPGLLAARELAQGPVIGIAEAAMHMATMVA--------TRFSIVTTLPRTLIIARHLLHQYG-----FHQHCAALHAIDLPVLALEDGSG------LAQEKVRERCIRALKEDGSGAIVLGS-------GGMATLAQQLTRELR---------VPVIDGVSAAVKMVESLVALGLATSKHGDLAFPEKKALSGQFQSLNPF------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QVL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26704 for 2120 contacts (-12.6/contact) +
2D Compatibility (PS) -24507 + (NN) 3832 + (LL) 2692
1D Compatibility (HY) -3200 + (ID) 1900
Total energy: -49787.0 ( -23.48 by residue)
QMean score : 0.206
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