Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MKGLWLVISLVFVGFLWANESYVFNNSKGRLTEKSVAFIEGVSKELYLKTGVRFAIDMTDFEKNPIALANKKERQSYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEKIAPLLPTNAKEYTPQRISAMLINGYSVAVDALAEKYHVNITQNFSA----PKGVTFVKVVIYILLLTLLGAFLGLYFFKKS
4PGR Chain:A ((9-215))
HESKQSIMQRILTVFVFTLLIATVGLFIGQFVPVALMLPLSILEVAMIILAFWMRRRKAVGYAFVYTFAFVSGITLFPIVSHYASIAGAYVVLEAFGSTFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIFSP-LNSAAMMAYSVIGTIVFSLYILYDLNQIKHRHITEDLIPVMALSLYLDFINLFINLLRFFGILSS
General information:
TITO was launched using:
RESULT:
Template:
4PGR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72533 for 1516 contacts (-47.8/contact) +
2D Compatibility (PS) -20586 + (NN) -7449 + (LL) 100
1D Compatibility (HY) -9200 + (ID) 950
Total energy: -110618.0 ( -72.97 by residue)
QMean score : 0.075
(partial model without unconserved sides chains):
PDB file :
Tito_4PGR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PGR-query.scw
PDB file :
Tito_Scwrl_4PGR.pdb
: