Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM-GIDMAVGMVK-IMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAERFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPD-DVRKSYLDAGGDLKGSKGVPFEFLQESIKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI |
4TO8 Chain:B ((3-284)) | -LVSMKEMLIDAKENGYAVGQYNINNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTIVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGG--DDVVAD--GIIYADPKECQELVEKTGIDALAPALGSVH--------PKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKA-------------IPF---------GTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTSNRA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124113 for 2407 contacts (-51.6/contact) +
2D Compatibility (PS) -29419 + (NN) -16410 + (LL) 1532
1D Compatibility (HY) -22000 + (ID) 6550
Total energy: -196960.0 ( -81.83 by residue)
QMean score : 0.583
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