Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADVVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKCKNIISSAVVVSVKDLCEEISAFEDLE-------NRLFISDRAHVILPYHAKKDAFKEKSQNIGTTKKGIGPCYEDKMARSGIRMGDLLD-DKILEEKLNAHFKAIEPFKKAY-DLGENYEKDLMGYFKTYAPKICPFIKDTTSMLIEANQK-GEKILLEGAQGTLLDIDLGTYPFVTSSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGVEFGTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYERKGERLEAFPSD---LKDCTPIYQTFKGWEKS-VGVRKLDDLEPNAREYIRFIEKEVGVKIGLISTSPEREDTIFL |
| 2V40 Chain:A ((32-458)) | RVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQQ------KKGIGPVYSSKAARSGLRMCDLVSDFDGFSERFKVLANQY---KSIYPTLEIDIEG-ELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFTEIKVGVAYKLDGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNARAFKELPVNAQNYVRFIEDELQIPVKWIGVGKSRESMIQL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217174 for 3404 contacts (-63.8/contact) +
2D Compatibility (PS) -42925 + (NN) -10327 + (LL) 196
1D Compatibility (HY) -38800 + (ID) 9200
Total energy: -318230.0 ( -93.49 by residue)
QMean score : 0.522
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