Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGDKVVWVLKNNGEWQPFDVRNKKAFSLSRLMHFARCCASFKK-KTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCLKSCLRMRPDRIILGELRSSEAY-DFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIKHR |
| 3JVV Chain:A ((5-270)) | ----------------------------------ELLAFSAKQGASDLHLSAGLPPMIRVD-GDVRRINL---PPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNR---GAGAVFRTIPSKVLTMEEL---GMGE-V--------FKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES---KKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHL-VFGTLHTTSAAKTIDRVVDVFPAE------EKAMVRSMLSESLQSVISQTLIKKRVAAHEIMI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JVV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164141 for 1953 contacts (-84.0/contact) +
2D Compatibility (PS) -27796 + (NN) -10417 + (LL) 4348
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -206156.0 ( -105.56 by residue)
QMean score : 0.421
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