Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMA-----WGGLSSLEGASHFVIYLARKG-VTYDSD-YVKKVMHEVKKRDYDTHSRFAQIIKNFQENDIKL-NSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMASFGYRNQEI-----TPKTRWKTEVIYEVIE |
1VFR Chain:A ((2-217)) | --THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQP-HIKACSHVILFANKLSYTRDDYDVVLSKAVADKRI-TEEQKEAAFASFKF----VELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFAD----ELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63170 for 1417 contacts (-44.6/contact) +
2D Compatibility (PS) -21539 + (NN) -5150 + (LL) 844
1D Compatibility (HY) -8400 + (ID) 2400
Total energy: -99815.0 ( -70.44 by residue)
QMean score : 0.564
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