Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHAMRVVA-PHVDNLGSEEEGYYNLKERYIP------LVTEISHKQHILFAKPDEKILRKAFKGADMIHTYLPFLLEKTAVKIAREMRVPYIGSFHLQPEHISYNMKLGQFSWLNTMLFSWFKSSHYRYIHHIHCPSKFIVEELEKYNYGGKK--YAISNGFDPMFKFEHPQKSLFDTTPFK-----IAMVGRYSNEKNQSVLIKAVA-LSRYKQDIVLLLKGKGPDEKKIKLLAQKLGVKTEFGF---VNSHELLEILKTCTLYAHTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPNLFKTLS |
| 3C48 Chain:A ((19-438)) | SHMRVAMISMHTSPLQQGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSH-YWLSGQVGWLLRDLWRIPLIHTAH------TLAAVKNSYDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVE-LYSPGTERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASG-TPVIAARV-GGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENVDGETHHG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164992 for 3153 contacts (-52.3/contact) +
2D Compatibility (PS) -41800 + (NN) -22342 + (LL) 1344
1D Compatibility (HY) -6400 + (ID) 3450
Total energy: -237640.0 ( -75.37 by residue)
QMean score : 0.461
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