Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------VK---SLSFMRVLEA-VRTMLQEKGGLDISIVMRDQ------VEMPTTMIEMIDQEEEESQTAWK-EKYRFAIHHYTNETDLAGVEK-------IDTLIQTGFTLPEGYKL---------IAVRHYGKQNLVKENTLIHAKTSFEVSICRELKVKI
1DDT Chain:? ((381-535))
SPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAENTPLPIAGVLLPT-IPGKLDVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFHRSSSEKIHSNEISSDSIGVLGYQK-------TVDHTKVNSKLSLFFEIKS--
General information:
TITO was launched using:
RESULT:
Template:
1DDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41462 for 769 contacts (-53.9/contact) +
2D Compatibility (PS) -12003 + (NN) 6532 + (LL) 816
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -53467.0 ( -69.53 by residue)
QMean score : -0.008
(partial model without unconserved sides chains):
PDB file :
Tito_1DDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DDT-query.scw
PDB file :
Tito_Scwrl_1DDT.pdb
: