Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKLDFSYNNANYNAEFLMKILTTLKDITKVE-QFTIEIIDAVPNDQEQFKEEKGLFSKE-VFDFNNLVKESHGIKIDFKEITNILKQCRTVWELSMLVVTSENELNDSGKVLCEVELIEGDLFAILYSEDFNIDLFLEKF---STDEITIEG--
4LQK Chain:A ((4-135))
--------SFKLILAEYIRHRNTISGNIYSALMTLDDLAIKQYGDIDLLFNEKLKVDSDSGLFDFVNFVKDM------------ICCDSRIVVALSSLVSKHWELTNKKYRCM---ALAEHISDSIPISELSRLRYNLSKYLRGHTESIEDKFDY
General information:
TITO was launched using:
RESULT:
Template:
4LQK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36404 for 930 contacts (-39.1/contact) +
2D Compatibility (PS) -12787 + (NN) 6 + (LL) 1732
1D Compatibility (HY) -4800 + (ID) 1550
Total energy: -53803.0 ( -57.85 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_4LQK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LQK-query.scw
PDB file :
Tito_Scwrl_4LQK.pdb
: