Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRIGFIGAGNMGTAMIRGLAQANLVKREEIIVGGRNLEKLKPLEAEFTGLQITTDTEKLVEQADIIILAVKPYTIPEILTSVKEKLTPDKIIISVAAGVTIQDLEELTSAKTKIVRVMPNTPALVGEAMSSVSPNTNVTSEELKEVTAIFTSFGEAEVVSENLMDAVIGVSGSSPAYVYMFIEALADGAVLSGMPRDKAYKFAAQAVLGAAKTVLETGEHPGKLKDMVTSPGGTTIEAVKSLENDGFRSAVINAVQAAAKKNSSM
2RCY Chain:A ((4-260))
NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNT--------TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAM
General information:
TITO was launched using:
RESULT:
Template:
2RCY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138484 for 1901 contacts (-72.8/contact) +
2D Compatibility (PS) -27632 + (NN) -6981 + (LL) 688
1D Compatibility (HY) -19200 + (ID) 4950
Total energy: -196559.0 ( -103.40 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2RCY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RCY-query.scw
PDB file :
Tito_Scwrl_2RCY.pdb
: