Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEKTIMERRSIKKANDEPISRETVNTILEQAAYAPFHSKVEPWNVYVLHTLAEKERYIEKIIEFNEREQGV-SFSE-AE-IADLKAGYAKKIITPPYLLIVTTNIIGHG------KK---DFESIGATSAFIQNIQLLGWEAGIGMIWRSNRFIFDAKFADDLGIPAEQKIVGTLHLTSLAEVPEAKPRRPLNEWVKNLADL
3GFA Chain:A ((2-197))
MISDSISKRRSIRKYKNQSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKESMLKAMSKGIQNEINDNGLLPGSRQHIAGANYTV-EIMKQAPVTIFILNILGKSPLEKLSPEERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVYFAYRELCEWLNTD--SQLVAAISLGYPDEEPSRRPRLQLSDVTEW----
General information:
TITO was launched using:
RESULT:
Template:
3GFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82166 for 1353 contacts (-60.7/contact) +
2D Compatibility (PS) -19798 + (NN) -6663 + (LL) 812
1D Compatibility (HY) -8800 + (ID) 1900
Total energy: -118515.0 ( -87.59 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_3GFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFA-query.scw
PDB file :
Tito_Scwrl_3GFA.pdb
: