Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAMINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVETLLKKSK
3JW4 Chain:A ((12-147))
----------DTPYSYLIRSIGMKLKTSADARLAELGLNSQQGRMIGYIYENQESGIIQKDLAQF------SITSMLQGLEKKGYIERR----------KNIYVLPKGAALVEEFNNI--FLEVEESITKGLTKDEQKQLMSILIKVNRS-----
General information:
TITO was launched using:
RESULT:
Template:
3JW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47602 for 700 contacts (-68.0/contact) +
2D Compatibility (PS) -12684 + (NN) -1603 + (LL) 1504
1D Compatibility (HY) -3600 + (ID) 1550
Total energy: -65535.0 ( -93.62 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3JW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JW4-query.scw
PDB file :
Tito_Scwrl_3JW4.pdb
: