Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSKNVKKIVITLFALIMTVGLASGFIAPIKASADTNNFTVKVEYVDADGAEIAPSDILTDYHYVSTP------KDIPGYKLREIPHNATG-----NITDTGIIVRYIYDK-TIDVRYVDETGKDLLPVVEIINSEAAVLETISDYTFVKKDISIDGLHIIFRYKKNISTIPDFG-----KPNQVTVNYLDENKTPIAPSLYLSGL--FNEAYNVPMKKIKGYTLLKYDSEILGVFTESPQTINIIY-----------QKKAPEQA---PSMEPLPDPTVPE-----------SPQVEKSKIKKSKIETTEKRTTSKVKIA-PKALKLTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRRRKE------------------------------------------ |
4CI0 Chain:A ((2-386)) | ----SERIVIS----------------------PTSRQEGHAELV----MEVDDEGIVTKGRYFSITPVRGLEKMVTGKAPETAPVMVQRICGVCPIPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAP-DFVPENLMADAINSVSEIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVNEHVELMIGLIEDKGLPEGLGVHNQPTLASHQIYGDRTKFDLDRFTEIMPESWYDDPEIAKRACSTIPLYDGRNVEVGPRARMVEFQGFKERGVVAQHVARALEMKTALSRAIEILDELDTSAPVRADFDERGTGK-----LGIGAIEAPRGLDVHMAKVENGKIQFYSALVPTTWNIPTMGPATEGFHHEYGPHVIRAYDPCLSCATH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CI0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8989 for 2253 contacts (4.0/contact) +
2D Compatibility (PS) -30153 + (NN) 6122 + (LL) 2828
1D Compatibility (HY) -5600 + (ID) 3100
Total energy: -20914.0 ( -9.28 by residue)
QMean score : 0.144
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