Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVTGWHRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDANLAAKNHISLTVFREDWLENLTLE---ATLRIHLKVDSGMGRLGIRTTEEARRIEATST-NDHQLQLEGIYTHFATADQLETSYFEQQLAKFQTILTSLKNRPTYVHTANSAASLLQPQ---IGFDAIRFGISMYGLTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGFHVLVGGELAPIIGRVCMDQTIIKLPREFQTGSKVTIIGKDHGNTITADDAAQYLDTINYEVTCLLNERIPRKYIH |
3CO8 Chain:A ((6-371)) | ----IHRSTRIEFSKSSLAYNVQYTKQVSG-AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGI-DDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKILGKEKLSVNLAVDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFA---------FQRQKNRWYELIDGL-IMPRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYGVEPSEGV-LGPIDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQLLIDGQKCRQVGQIAMDQMMVALPHEYPIGTEVTLIGKSGKYENTLYDLHKHSGVPPWKITVAFSDRLKRMVV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210552 for 2967 contacts (-71.0/contact) +
2D Compatibility (PS) -37743 + (NN) -8800 + (LL) 1312
1D Compatibility (HY) -26400 + (ID) 5850
Total energy: -288033.0 ( -97.08 by residue)
QMean score : 0.551
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