Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNDKLPASVLSVKVVSNVDNGLFKQLDLKPHQRSLGIITSDCDDVTYTALDEATKAAEVDVVYAKSMYAGAGNASTKFAGEVIGIIAGPSPAEVKSGLAVAVDFIENGASFVSANEDDSVPYFAHCVSRTGTFLSKEANVAEGEAIAYLIAPP-LEAMYALDAALKAADVTIGAFYGPPSETNFGGALLTGSQSACKAACDAFKMAVENVAENPLQY
3GFH Chain:A ((4-215))
--LDLIRPSVTAMRVIASVNADFARELKLPPHIRSLGLISADSDDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQDTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLE-ATYGIDAALKSADVQLATYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNP---
General information:
TITO was launched using:
RESULT:
Template:
3GFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147362 for 1804 contacts (-81.7/contact) +
2D Compatibility (PS) -22950 + (NN) -11905 + (LL) 764
1D Compatibility (HY) -17200 + (ID) 5400
Total energy: -204053.0 ( -113.11 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3GFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFH-query.scw
PDB file :
Tito_Scwrl_3GFH.pdb
: