Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTGSAARASTGDNTIPVDACIVGIIDSVERYG
4N8F Chain:D ((1-87))
MKIARVCGTVTSTQKEDTLTGVKFLVLQYLGEDGEFLPDYEVAADTVGAGQDEWVLVSRGSAARHIINGTDKPIDAAVVAIIDTVSR--
General information:
TITO was launched using:
RESULT:
Template:
4N8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45295 for 568 contacts (-79.7/contact) +
2D Compatibility (PS) -9276 + (NN) -4211 + (LL) -80
1D Compatibility (HY) -8000 + (ID) 1750
Total energy: -68612.0 ( -120.80 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_4N8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N8F-query.scw
PDB file :
Tito_Scwrl_4N8F.pdb
: