Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNC-EIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
1OKB Chain:A ((4-221))
---FGETWRRELAAEFEKPYFKQLMSFVADERSRHTVYPPADQVYSWTEMCDIQDVKVVILGQDPYHGPNQAHGLCFSVQKPVPPPPSLVNIYKELCTDIDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKDRGWETFTDAVIKWLSVNREGVVFLLWGSYAHKKGATIDRKRHHVLQAVHPSPLSAHRGFLGCKHFSKANGLLKLSGTEPINWR----
General information:
TITO was launched using:
RESULT:
Template:
1OKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97647 for 1772 contacts (-55.1/contact) +
2D Compatibility (PS) -23267 + (NN) -8060 + (LL) 716
1D Compatibility (HY) -18400 + (ID) 5550
Total energy: -152208.0 ( -85.90 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_1OKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKB-query.scw
PDB file :
Tito_Scwrl_1OKB.pdb
: