Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGR-KMWEGTLVSYDGT--TLVITIT-DKT---RKITCEIPKDKVAKARLAIQF
2VC8 Chain:A ((3-64))
--------------------------------------------------------------------------------------------TDWLGSIVSINCGD----SLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKI----
General information:
TITO was launched using:
RESULT:
Template:
2VC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21112 for 313 contacts (-67.5/contact) +
2D Compatibility (PS) -5906 + (NN) -1200 + (LL) 6988
1D Compatibility (HY) -3600 + (ID) 250
Total energy: -25080.0 ( -80.13 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2VC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VC8-query.scw
PDB file :
Tito_Scwrl_2VC8.pdb
: