Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKVLTFENISYWYKTKDESILNDINYDFEAGVFYTVVGSSGSGKTTFLSLAGGLDTQKEGDIYYKGSSLKS--IGLQQFRNKYVSIVFQSYNLLTYMTALQNVTTA-MEITHVNQPDKKAFALSMLEKVGITEEMARQKVLTLSGGQQQRVSIARALCCETELIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEIAK-VSDVKLTLKNGSFVEKKQSMNSLINS
4YMV Chain:A ((16-217))
--------------------VLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQK-VGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDK-KDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLAN-EGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEE----------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101607 for 1554 contacts (-65.4/contact) +
2D Compatibility (PS) -21578 + (NN) -6239 + (LL) 2488
1D Compatibility (HY) -23200 + (ID) 3400
Total energy: -153536.0 ( -98.80 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: