Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEILLQKVYDQENLSKEEMNIIATEIFEGRLSKTKMAAFLMALKVKGETAEEMAGIAQAMQQVAIQVAFPAGT----AMDNCGTGGDKSNSFNISTTSAFVLAAAGIPVAKHGNRSISSRSGSADVCQELGIDINLRPEDMTYLLEKVGIAFLFAPHVHPNMKYVMDVRKELGTPTIFNLIGPLTNPVHLETQLMGIYRRDLLEQTAEVLGQLGRKRAVVLNGAGFMDEASLAGENHYALYENGEVHLYTLRPEDVGLTSYPLEAITGGDAKENAAILRSVLEGEPGAYLDTVLLNAGFGLFANGKVET-------VQEGVDLAKDLISSGLAKQKLADLITYQKEVLAK |
4N8Q Chain:B ((30-372)) | ---ILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHP--LPADTVPDDAVDVVGTGG----TVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAAR-RSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQILA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4N8Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207177 for 2990 contacts (-69.3/contact) +
2D Compatibility (PS) -35184 + (NN) -16579 + (LL) 624
1D Compatibility (HY) -21600 + (ID) 6200
Total energy: -286116.0 ( -95.69 by residue)
QMean score : 0.571
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