Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKLIIAALGLTLVLSGCAPKLDSNDKVVQKDDSKAETGIMTKNQISSNYYKTVLPYKASKSRGLV-VSNIYSRYDINELESGLMRVSQNKYSPDNYLFQEGQYLDKETLEKWLDRKSDKNPNGLNPASNGNGENRKPIYLAHILEQDYLKQTDKDTVALGGISIALAMNSVDYYQKEKYGDT--YEQPISDSELLAQGKEMSATVLNRIRQTKGLENVPVTIAIYKQGA--RDAVAPGNYIAYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNFLNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQHIPKTADLQVNISTSDGPAALITRKANEDAATAHIYD |
| 4BVA Chain:A ((24-334)) | KRAPAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPV-------RTVVPV--AKHRGFLGVMPAYSA-------------AEDALTTKLVTFYES---HQASVLLF-----DPSNGSLLAVMDGNVITAKRTAAVSAIATKLLKPPGSDVLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAEKFASTVQGDVRVCSSVQEAVTGADVIITVTMATEPILFGEWVKPG---AHINAVGASRPDWRELD-------------------DELMRQAVLYVDS-------REAALKESGDVLLSGADIFAE---------LGEVISGAKPAHCEKT---TVFKSLGMAVEDLVAAKLVYDSWSSG--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 96301 for 2632 contacts (36.6/contact) +
2D Compatibility (PS) -31278 + (NN) -4963 + (LL) 4244
1D Compatibility (HY) -7200 + (ID) 2600
Total energy: 54504.0 ( 20.71 by residue)
QMean score : 0.162
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