Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MKVAISGGGTGGHVYPALALIRELKKSHPEAEFLY---------------------IGTEKGLEAGIVKREGIPFEAIEITGFKRSLSLENIKTVMRFLSG-----------AKKSKQILRDFKPDVVIGTGGYVCGPVVYAAAKLKIPTLIHEQNSVAGLTNKFLSRYT------------DKVAICFEEVSDSFASEKI-----VFTGNPRASEVVGVDSEGALE--AYGLVSGKPTVLVFGGSRGARGV--NEAVEAVLPEWNNRDFQLLYVTGDVHYEKIKDSLAELNLGNHISVQPFIYDMPKILNAVTLVVSRAGATTLAELTALGVPSILIPSPYVTANHQENNARALEKNNAAIVITEAELKNTDLMATVDSILNDEAKLNSMKLSAKQMGRPDAAAKLVEAVLSIMK- |
| 2YJN Chain:A ((19-436)) | SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWGPDITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPERRRVCLTLQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFVP-------MHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDG----WDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSPAEVVGICEELAAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YJN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116769 for 2808 contacts (-41.6/contact) +
2D Compatibility (PS) -37531 + (NN) -12877 + (LL) 1004
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -181623.0 ( -64.68 by residue)
QMean score : 0.353
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