Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF
4WY0 Chain:H ((25-280))
---------------EMQKGGVIMDVVNAEQAKIAEAAGAVAVMALE----------GVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKG------------------------
General information:
TITO was launched using:
RESULT:
Template:
4WY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173237 for 2136 contacts (-81.1/contact) +
2D Compatibility (PS) -27305 + (NN) -15841 + (LL) 2604
1D Compatibility (HY) -30800 + (ID) 9800
Total energy: -254379.0 ( -119.09 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_4WY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WY0-query.scw
PDB file :
Tito_Scwrl_4WY0.pdb
: