Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDMHGKSFQIAGEEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPEFVMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSERE--G--FVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
1F5V Chain:A ((1-239))
MTPTIELICGHRSIRHFTD-EPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQ-----LGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRLPASILVHENSYQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRPFILDYLHKQGWAT--
General information:
TITO was launched using:
RESULT:
Template:
1F5V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154439 for 1709 contacts (-90.4/contact) +
2D Compatibility (PS) -26326 + (NN) -14505 + (LL) 212
1D Compatibility (HY) -12400 + (ID) 3700
Total energy: -211158.0 ( -123.56 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1F5V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F5V-query.scw
PDB file :
Tito_Scwrl_1F5V.pdb
: