Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDRILNNKWSIRIIALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDPKKV-SITGAKDTIEQIAYVKATLESDGKHK-SEFTDKATVSVFDSNLNKLDVEV-----NPQEVEVT-VPVEKVGKSVPV--KIKQEGTPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKE---VTVPVPTGAKSVQPTTIEVKIKTVKKSEANNNPTTSDSNNQDTDT-TDNNTDDSGDNNTKISKSFSNMQVYMSGLKNTFDAQMITPANGKV-SVTITGEKKTVDGIAAKDLSVIANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSKST-- |
| 4FDW Chain:A ((21-401)) | ------------------------------ASLEDFSIEQLPAK--------TIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSS-----SVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYN------------------EIILPNSVKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTS-----------QLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFY------YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGL---------LGGNRKVTQLTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNANGWRDFTNKITTF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4FDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 120910 for 2845 contacts (42.5/contact) +
2D Compatibility (PS) -38688 + (NN) -13075 + (LL) 7744
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: 59591.0 ( 20.95 by residue)
QMean score : 0.133
|
|
|