Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENRISGTTRLLGLIGTPIDHSKSPIMYNYSFQKAGLDYAYLAFDTPIQKVADTIKAIKTFNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIVNE--DGKLTGHITDGLGFIANLRDA-SVDVAGKKMTIIGAGGAATAIQVQCALDGAKEITIFNIKDAFYDKAKQTVASIKQEVPNCIVHIYDLNDTEKLNAEITTSDILVNATLVGMHPNEHETPISDTSVFRKELIVADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKLFTGKDMPVSEVKDLYFN |
2GPT Chain:A ((228-509)) | --RRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHL--LVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGL-------TVVVIGAGGAGKALAYGAKEKGAKVV----IANRTYER--ELAEAIG--A-------LSLTDLDNY--E--DGMVLANTTSMGMQPNVEETPISKDAL-KHYALVFDAVYTPRITRLLREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAP----KELYWQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GPT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -123511 for 2234 contacts (-55.3/contact) +
2D Compatibility (PS) -27009 + (NN) -7018 + (LL) 2736
1D Compatibility (HY) -16800 + (ID) 4650
Total energy: -176252.0 ( -78.90 by residue)
QMean score : 0.609
|
|
|