Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKSENL--
4V0C Chain:A ((7-108))
----------------------HHHHHGSDYDDIFTTESAL----------------KVQQKQRQKHFNRQIPAAASLIQTAWRCYAAENP-------DSSTWKIYIEFSQLREHHRATIKVIRRMQYFVAKKKFQQARKP
General information:
TITO was launched using:
RESULT:
Template:
4V0C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20340 for 351 contacts (-57.9/contact) +
2D Compatibility (PS) -9604 + (NN) -2085 + (LL) 4608
1D Compatibility (HY) 5600 + (ID) 700
Total energy: -22521.0 ( -64.16 by residue)
QMean score : 0.007
(partial model without unconserved sides chains):
PDB file :
Tito_4V0C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V0C-query.scw
PDB file :
Tito_Scwrl_4V0C.pdb
: