Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG
3TT7 Chain:E ((4-191))
---IPTVI--------AYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILT-------
General information:
TITO was launched using:
RESULT:
Template:
3TT7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122632 for 1372 contacts (-89.4/contact) +
2D Compatibility (PS) -19289 + (NN) -6136 + (LL) 536
1D Compatibility (HY) -23600 + (ID) 6950
Total energy: -178071.0 ( -129.79 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_3TT7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TT7-query.scw
PDB file :
Tito_Scwrl_3TT7.pdb
: