Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKTS---HEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIY-GDFGYEDAISSDEFSLSYLAAP--SSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV-------FPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 3THO Chain:B ((1-251)) | ---------------------------------------MKILHTSDWHLGVTSWTSS----------RPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMR-TAPVVVLPGNQDWKGLKL--FG-------------NFVTSISSDITFV------MSFEPVDVEAKRGQKVRILPFPYPDES--------KNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAG---------REIIINRALIPSVVDYAALGHIHSFREIQK----QPLT--IYPGSLIRIDFGEEADEKGAVFVELKRG-------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3THO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -63013 for 1796 contacts (-35.1/contact) +
2D Compatibility (PS) -24627 + (NN) -8168 + (LL) 10508
1D Compatibility (HY) -7200 + (ID) 2050
Total energy: -94550.0 ( -52.64 by residue)
QMean score : 0.350
|
|
|