Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTIMLVCSAGMSTSLLVTKMEKAAEAQGIEAKIFAVAEAEAANHLDEIDVLLLGPQVRFLEGNMKKKLEPKGIPLAVINSVDYGMMKGDKVLEQALELMK----
1IIB Chain:A ((3-105))
KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPN--KPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAA
General information:
TITO was launched using:
RESULT:
Template:
1IIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81133 for 762 contacts (-106.5/contact) +
2D Compatibility (PS) -10728 + (NN) -6360 + (LL) -108
1D Compatibility (HY) -9200 + (ID) 2000
Total energy: -109529.0 ( -143.74 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_1IIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IIB-query.scw
PDB file :
Tito_Scwrl_1IIB.pdb
: