Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFFIDTANVEEIKKANRMGFISGVTTNPSLVAKEGR-DFNEVIQEITSIVDGPISGEVVSLEADEMIAEGRVIAKIHPNMVVKIPMTGEGLAAVKVLTEEGIKTNVTLVFSATQALLAARAGATYVSPFLGRLDDIGDDGLVLIRDIADIFEIHGIPTEIISASVRHPIHVIECAKAGADIATVPFKVFEQMLKHPLTDSGIDKFLADWEAAKK
3R8R Chain:B ((1-210))
MLFFVDTANIDEIREANELGILAGVTTNPSLVAKEANVSFHDRLREITDVVKGSVSAEVISLKAEEMIEEGKELAKIAPNITVKIPMTSDGLKAVRALTDLGIKTNVTLIFNANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTKHPLTDKGIEQFLADW-----
General information:
TITO was launched using:
RESULT:
Template:
3R8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132160 for 1704 contacts (-77.6/contact) +
2D Compatibility (PS) -22985 + (NN) -6961 + (LL) 520
1D Compatibility (HY) -23600 + (ID) 6650
Total energy: -191836.0 ( -112.58 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_3R8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R8R-query.scw
PDB file :
Tito_Scwrl_3R8R.pdb
: