Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFLKELESNLTVSKLMELCFEHPNYKDYCSVISTKKGEVLESLSPAGTKVYFVLSGIYGMIVEEDAEMEEESCKECIVRFLQKGDSFGLYHLFYDEWSPHVSMQSLGHGEVMEVDSNFLFSIFDKKDENNFFMIKVMAEELREAHT-FAKLSFLKKEERIRKAILKCAQTLGTFSDNGILLPREITQEVLARYTNTSREYVAHTVMHLIKEDIIRNR-PKPLLVMDKTRL
2FMY Chain:A ((21-213))
-----------------------SGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLA-Y------EDKEFTLAILEAGDIFCT-------HTRA-FIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQKL
General information:
TITO was launched using:
RESULT:
Template:
2FMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77930 for 1332 contacts (-58.5/contact) +
2D Compatibility (PS) -20899 + (NN) -12970 + (LL) 4116
1D Compatibility (HY) -10400 + (ID) 1950
Total energy: -120033.0 ( -90.11 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_2FMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FMY-query.scw
PDB file :
Tito_Scwrl_2FMY.pdb
: