Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKLCKQLIETLVESMGITVPVAIHLDHGH-YDDALECIEVGYTSIMFDGSHLPVEENLEKAREVVAKAHAKGISVEAEVGTIGGEEDGIVGKGELA----PIEDAKAMVETGIDFLAAGIGNIHGPYPANWE-GLDLDHLKKLTEAVPGFPIVLHGGSGIPDDQ---------------------IQEAIKLGVAKVNVNTECQLAFCQATRDYAVEFNANEAEYMKKKLFDPRKFLKPGFDAITEAVEERIDVFGSANKA |
| 3C56 Chain:B ((2-306)) | --LVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMG-IDMAVGMVKIMCERYP-HIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLM-------------VLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKR-LTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANE---------DKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C56.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118084 for 2295 contacts (-51.5/contact) +
2D Compatibility (PS) -30109 + (NN) -20842 + (LL) 1624
1D Compatibility (HY) -23600 + (ID) 5350
Total energy: -196361.0 ( -85.56 by residue)
QMean score : 0.637
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