Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIPALPLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTGPTAGYVIAWLFVPLLISYGVKLVNKKNFIAIFLIVWLAGVLFVDVAGAVWLASYTNIPLDKSLLQNLVFIPGDTIKAIIAAVVAVKYKDSFFLTEK
4HUQ Chain:S ((10-173))
--DTLSMVTMGVLMALQLVIS---RFSVGNNFIKVSFTFLIVALIAKWFGPWWGMLTAAVVDVIGTLMT--GGPFFIGFTVSAVLGSLIYAVFL------YRQPVSWWRVIGASVLIALLVNTLLNTLWVTIMYQTPFWSLLPVRALKELIVTPVQIVLVYLLLKSQVIQMIQARLN--
General information:
TITO was launched using:
RESULT:
Template:
4HUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120184 for 1178 contacts (-102.0/contact) +
2D Compatibility (PS) -16666 + (NN) 418 + (LL) 1608
1D Compatibility (HY) -11200 + (ID) 1300
Total energy: -147324.0 ( -125.06 by residue)
QMean score : 0.151
(partial model without unconserved sides chains):
PDB file :
Tito_4HUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HUQ-query.scw
PDB file :
Tito_Scwrl_4HUQ.pdb
: